# Stanza Demo ## Docs - [.readthedocs.yml](https://demo.agenticlabs.com/detailed-code-docs/.readthedocs.yml.md) - [README.md](https://demo.agenticlabs.com/detailed-code-docs/README.md.md) - [build.py](https://demo.agenticlabs.com/detailed-code-docs/build.py.md) - [__init__.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/__init__.py.md) - [__init__.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/critique/__init__.py.md) - [compare.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/critique/compare.py.md) - [critique_utilities.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/critique/critique_utilities.py.md) - [Overview](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/critique/overview.md) - [CassiopeiaTree.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/data/CassiopeiaTree.py.md) - [Layers.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/data/Layers.py.md) - [__init__.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/data/__init__.py.md) - [Overview](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/data/overview.md) - [utilities.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/data/utilities.py.md) - [__init__.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/mixins/__init__.py.md) - [errors.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/mixins/errors.py.md) - [logging.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/mixins/logging.py.md) - [Overview](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/mixins/overview.md) - [utilities.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/mixins/utilities.py.md) - [warnings.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/mixins/warnings.py.md) - [Overview](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/overview.md) - [__init__.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/plotting/__init__.py.md) - [itol_utilities.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/plotting/itol_utilities.py.md) - [local.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/plotting/local.py.md) - [local_3d.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/plotting/local_3d.py.md) - [Overview](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/plotting/overview.md) - [palettes.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/plotting/palettes.py.md) - [utilities.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/plotting/utilities.py.md) - [UMI_utils.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/preprocess/UMI_utils.py.md) - [__init__.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/preprocess/__init__.py.md) - [alignment_utilities.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/preprocess/alignment_utilities.py.md) - [cassiopeia_preprocess.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/preprocess/cassiopeia_preprocess.py.md) - [constants.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/preprocess/constants.py.md) - [doublet_utils.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/preprocess/doublet_utils.py.md) - [lineage_utils.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/preprocess/lineage_utils.py.md) - [map_utils.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/preprocess/map_utils.py.md) - [Overview](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/preprocess/overview.md) - [pipeline.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/preprocess/pipeline.py.md) - [setup_utilities.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/preprocess/setup_utilities.py.md) - [utilities.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/preprocess/utilities.py.md) - [BirthDeathFitnessSimulator.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/simulator/BirthDeathFitnessSimulator.py.md) - [BrownianSpatialDataSimulator.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/simulator/BrownianSpatialDataSimulator.py.md) - [Cas9LineageTracingDataSimulator.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/simulator/Cas9LineageTracingDataSimulator.py.md) - [ClonalSpatialDataSimulator.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/simulator/ClonalSpatialDataSimulator.py.md) - [CompleteBinarySimulator.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/simulator/CompleteBinarySimulator.py.md) - [DataSimulator.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/simulator/DataSimulator.py.md) - [LeafSubsampler.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/simulator/LeafSubsampler.py.md) - [LineageTracingDataSimulator.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/simulator/LineageTracingDataSimulator.py.md) - [SequentialLineageTracingDataSimulator.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/simulator/SequentialLineageTracingDataSimulator.py.md) - [SimpleFitSubcloneSimulator.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/simulator/SimpleFitSubcloneSimulator.py.md) - [SpatialDataSimulator.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/simulator/SpatialDataSimulator.py.md) - [SpatialLeafSubsampler.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/simulator/SpatialLeafSubsampler.py.md) - [SupercellularSampler.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/simulator/SupercellularSampler.py.md) - [TreeSimulator.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/simulator/TreeSimulator.py.md) - [UniformLeafSubsampler.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/simulator/UniformLeafSubsampler.py.md) - [__init__.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/simulator/__init__.py.md) - [ecDNABirthDeathSimulator.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/simulator/ecDNABirthDeathSimulator.py.md) - [Overview](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/simulator/overview.md) - [CassiopeiaSolver.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/solver/CassiopeiaSolver.py.md) - [DistanceSolver.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/solver/DistanceSolver.py.md) - [GreedySolver.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/solver/GreedySolver.py.md) - [HybridSolver.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/solver/HybridSolver.py.md) - [ILPSolver.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/solver/ILPSolver.py.md) - [MaxCutGreedySolver.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/solver/MaxCutGreedySolver.py.md) - [MaxCutSolver.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/solver/MaxCutSolver.py.md) - [NeighborJoiningSolver.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/solver/NeighborJoiningSolver.py.md) - [PercolationSolver.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/solver/PercolationSolver.py.md) - [SharedMutationJoiningSolver.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/solver/SharedMutationJoiningSolver.py.md) - [SpectralGreedySolver.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/solver/SpectralGreedySolver.py.md) - [SpectralNeighborJoiningSolver.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/solver/SpectralNeighborJoiningSolver.py.md) - [SpectralSolver.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/solver/SpectralSolver.py.md) - [UPGMASolver.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/solver/UPGMASolver.py.md) - [VanillaGreedySolver.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/solver/VanillaGreedySolver.py.md) - [__init__.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/solver/__init__.py.md) - [dissimilarity_functions.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/solver/dissimilarity_functions.py.md) - [graph_utilities.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/solver/graph_utilities.py.md) - [missing_data_methods.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/solver/missing_data_methods.py.md) - [Overview](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/solver/overview.md) - [solver_utilities.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/solver/solver_utilities.py.md) - [__init__.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/tools/__init__.py.md) - [autocorrelation.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/tools/autocorrelation.py.md) - [BranchLengthEstimator.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/tools/branch_length_estimator/BranchLengthEstimator.py.md) - [IIDExponentialBayesian.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/tools/branch_length_estimator/IIDExponentialBayesian.py.md) - [IIDExponentialMLE.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/tools/branch_length_estimator/IIDExponentialMLE.py.md) - [__init__.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/tools/branch_length_estimator/__init__.py.md) - [_iid_exponential_bayesian_cpp.cpp](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/tools/branch_length_estimator/_iid_exponential_bayesian_cpp.cpp.md) - [_iid_exponential_bayesian_cpp.h](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/tools/branch_length_estimator/_iid_exponential_bayesian_cpp.h.md) - [Overview](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/tools/branch_length_estimator/overview.md) - [coupling.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/tools/coupling.py.md) - [_FitnessEstimator.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/tools/fitness_estimator/_FitnessEstimator.py.md) - [__init__.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/tools/fitness_estimator/__init__.py.md) - [__init__.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/tools/fitness_estimator/_jungle/jungle/__init__.py.md) - [forest.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/tools/fitness_estimator/_jungle/jungle/forest.py.md) - [Overview](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/tools/fitness_estimator/_jungle/jungle/overview.md) - [README.md](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/tools/fitness_estimator/_jungle/jungle/resources/FitnessInference/README.md.md) - [__init__.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/tools/fitness_estimator/_jungle/jungle/resources/FitnessInference/__init__.py.md) - [infer_fitness.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/tools/fitness_estimator/_jungle/jungle/resources/FitnessInference/infer_fitness.py.md) - [Overview](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/tools/fitness_estimator/_jungle/jungle/resources/FitnessInference/overview.md) - [__init__.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/tools/fitness_estimator/_jungle/jungle/resources/FitnessInference/prediction_src/__init__.py.md) - [ancestral.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/tools/fitness_estimator/_jungle/jungle/resources/FitnessInference/prediction_src/ancestral.py.md) - [fitness_inference.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/tools/fitness_estimator/_jungle/jungle/resources/FitnessInference/prediction_src/fitness_inference.py.md) - [node_ranking.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/tools/fitness_estimator/_jungle/jungle/resources/FitnessInference/prediction_src/node_ranking.py.md) - [Overview](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/tools/fitness_estimator/_jungle/jungle/resources/FitnessInference/prediction_src/overview.md) - [sequence_ranking.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/tools/fitness_estimator/_jungle/jungle/resources/FitnessInference/prediction_src/sequence_ranking.py.md) - [solve_survival.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/tools/fitness_estimator/_jungle/jungle/resources/FitnessInference/prediction_src/solve_survival.py.md) - [tree_utils.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/tools/fitness_estimator/_jungle/jungle/resources/FitnessInference/prediction_src/tree_utils.py.md) - [rank_sequences.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/tools/fitness_estimator/_jungle/jungle/resources/FitnessInference/rank_sequences.py.md) - [__init__.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/tools/fitness_estimator/_jungle/jungle/resources/__init__.py.md) - [__init__.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/tools/fitness_estimator/_jungle/jungle/resources/betatree/__init__.py.md) - [Overview](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/tools/fitness_estimator/_jungle/jungle/resources/betatree/overview.md) - [__init__.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/tools/fitness_estimator/_jungle/jungle/resources/betatree/src/__init__.py.md) - [betatree.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/tools/fitness_estimator/_jungle/jungle/resources/betatree/src/betatree.py.md) - [Overview](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/tools/fitness_estimator/_jungle/jungle/resources/betatree/src/overview.md) - [sfs.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/tools/fitness_estimator/_jungle/jungle/resources/betatree/src/sfs.py.md) - [sfs_py3.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/tools/fitness_estimator/_jungle/jungle/resources/betatree/src/sfs_py3.py.md) - [Overview](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/tools/fitness_estimator/_jungle/jungle/resources/overview.md) - [sfs.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/tools/fitness_estimator/_jungle/jungle/sfs.py.md) - [size_matched_model.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/tools/fitness_estimator/_jungle/jungle/size_matched_model.py.md) - [tree.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/tools/fitness_estimator/_jungle/jungle/tree.py.md) - [Overview](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/tools/fitness_estimator/_jungle/overview.md) - [generate_annotate_forest.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/tools/fitness_estimator/_jungle/reference_data/generate_annotate_forest.py.md) - [Overview](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/tools/fitness_estimator/_jungle/reference_data/overview.md) - [_lbi_jungle.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/tools/fitness_estimator/_lbi_jungle.py.md) - [Overview](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/tools/fitness_estimator/overview.md) - [Overview](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/tools/overview.md) - [parameter_estimators.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/tools/parameter_estimators.py.md) - [small_parsimony.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/tools/small_parsimony.py.md) - [topology.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/tools/topology.py.md) - [tree_metrics.py](https://demo.agenticlabs.com/detailed-code-docs/cassiopeia/tools/tree_metrics.py.md) - [codecov.yml](https://demo.agenticlabs.com/detailed-code-docs/codecov.yml.md) - [conftest.py](https://demo.agenticlabs.com/detailed-code-docs/conftest.py.md) - [override.css](https://demo.agenticlabs.com/detailed-code-docs/docs/_static/css/override.css.md) - [Overview](https://demo.agenticlabs.com/detailed-code-docs/docs/_static/css/overview.md) - [sphinx_gallery.css](https://demo.agenticlabs.com/detailed-code-docs/docs/_static/css/sphinx_gallery.css.md) - [Overview](https://demo.agenticlabs.com/detailed-code-docs/docs/_static/overview.md) - [layout.html](https://demo.agenticlabs.com/detailed-code-docs/docs/_templates/layout.html.md) - [Overview](https://demo.agenticlabs.com/detailed-code-docs/docs/_templates/overview.md) - [conf.py](https://demo.agenticlabs.com/detailed-code-docs/docs/conf.py.md) - [Overview](https://demo.agenticlabs.com/detailed-code-docs/docs/extensions/overview.md) - [typed_returns.py](https://demo.agenticlabs.com/detailed-code-docs/docs/extensions/typed_returns.py.md) - [Overview](https://demo.agenticlabs.com/detailed-code-docs/docs/overview.md) - [Overview](https://demo.agenticlabs.com/detailed-code-docs/github_workflows/overview.md) - [test.yml](https://demo.agenticlabs.com/detailed-code-docs/github_workflows/test.yml.md) - [Overview](https://demo.agenticlabs.com/detailed-code-docs/project_root.md) - [pyproject.toml](https://demo.agenticlabs.com/detailed-code-docs/pyproject.toml.md) - [setup.py](https://demo.agenticlabs.com/detailed-code-docs/setup.py.md) - [compare_tree_test.py](https://demo.agenticlabs.com/detailed-code-docs/test/critique_tests/compare_tree_test.py.md) - [Overview](https://demo.agenticlabs.com/detailed-code-docs/test/critique_tests/overview.md) - [cassiopeia_tree_test.py](https://demo.agenticlabs.com/detailed-code-docs/test/data_tests/cassiopeia_tree_test.py.md) - [data_utilities_test.py](https://demo.agenticlabs.com/detailed-code-docs/test/data_tests/data_utilities_test.py.md) - [layers_test.py](https://demo.agenticlabs.com/detailed-code-docs/test/data_tests/layers_test.py.md) - [Overview](https://demo.agenticlabs.com/detailed-code-docs/test/data_tests/overview.md) - [mixin_utilities_test.py](https://demo.agenticlabs.com/detailed-code-docs/test/mixin_tests/mixin_utilities_test.py.md) - [Overview](https://demo.agenticlabs.com/detailed-code-docs/test/mixin_tests/overview.md) - [Overview](https://demo.agenticlabs.com/detailed-code-docs/test/overview.md) - [itol_plotting_test.py](https://demo.agenticlabs.com/detailed-code-docs/test/plotting_tests/itol_plotting_test.py.md) - [local_3d_test.py](https://demo.agenticlabs.com/detailed-code-docs/test/plotting_tests/local_3d_test.py.md) - [local_test.py](https://demo.agenticlabs.com/detailed-code-docs/test/plotting_tests/local_test.py.md) - [Overview](https://demo.agenticlabs.com/detailed-code-docs/test/plotting_tests/overview.md) - [utilities_test.py](https://demo.agenticlabs.com/detailed-code-docs/test/plotting_tests/utilities_test.py.md) - [align_sequence_test.py](https://demo.agenticlabs.com/detailed-code-docs/test/preprocess_tests/align_sequence_test.py.md) - [call_alleles_test.py](https://demo.agenticlabs.com/detailed-code-docs/test/preprocess_tests/call_alleles_test.py.md) - [call_lineage_groups_test.py](https://demo.agenticlabs.com/detailed-code-docs/test/preprocess_tests/call_lineage_groups_test.py.md) - [character_matrix_test.py](https://demo.agenticlabs.com/detailed-code-docs/test/preprocess_tests/character_matrix_test.py.md) - [collapse_umi_test.py](https://demo.agenticlabs.com/detailed-code-docs/test/preprocess_tests/collapse_umi_test.py.md) - [config_parser_test.py](https://demo.agenticlabs.com/detailed-code-docs/test/preprocess_tests/config_parser_test.py.md) - [convert_fastqs_to_unmapped_bam_test.py](https://demo.agenticlabs.com/detailed-code-docs/test/preprocess_tests/convert_fastqs_to_unmapped_bam_test.py.md) - [error_correct_cellbcs_to_whitelist_test.py](https://demo.agenticlabs.com/detailed-code-docs/test/preprocess_tests/error_correct_cellbcs_to_whitelist_test.py.md) - [error_correct_intbcs_to_whitelist_test.py](https://demo.agenticlabs.com/detailed-code-docs/test/preprocess_tests/error_correct_intbcs_to_whitelist_test.py.md) - [error_correct_umi_test.py](https://demo.agenticlabs.com/detailed-code-docs/test/preprocess_tests/error_correct_umi_test.py.md) - [filter_bam_test.py](https://demo.agenticlabs.com/detailed-code-docs/test/preprocess_tests/filter_bam_test.py.md) - 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[snj_solver_test.py](https://demo.agenticlabs.com/detailed-code-docs/test/solver_tests/snj_solver_test.py.md) - [spectral_test.py](https://demo.agenticlabs.com/detailed-code-docs/test/solver_tests/spectral_test.py.md) - [upgma_test.py](https://demo.agenticlabs.com/detailed-code-docs/test/solver_tests/upgma_test.py.md) - [vanillagreedy_test.py](https://demo.agenticlabs.com/detailed-code-docs/test/solver_tests/vanillagreedy_test.py.md) - [autocorrelation_test.py](https://demo.agenticlabs.com/detailed-code-docs/test/tools_tests/autocorrelation_test.py.md) - [iid_exponential_bayesian_test.py](https://demo.agenticlabs.com/detailed-code-docs/test/tools_tests/branch_length_estimator_tests/iid_exponential_bayesian_test.py.md) - [iid_exponential_mle_test.py](https://demo.agenticlabs.com/detailed-code-docs/test/tools_tests/branch_length_estimator_tests/iid_exponential_mle_test.py.md) - [Overview](https://demo.agenticlabs.com/detailed-code-docs/test/tools_tests/branch_length_estimator_tests/overview.md) - 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