warnings.py
High-level description
This file defines custom warning classes for various components of the Cassiopeia library. These warning classes inherit from the built-in UserWarning class and are used to provide specific warnings related to different aspects of the library’s functionality.
Code Structure
The code consists of several custom warning classes, each inheriting from UserWarning. These classes are defined to categorize warnings related to specific parts of the Cassiopeia library.
Symbols
CassiopeiaTreeWarning
Description
A general warning class for the CassiopeiaTree class, used to signal potential issues or unexpected behavior within the tree structure or operations.
Inputs
None
Outputs
None
Internal Logic
This class simply inherits from UserWarning and does not define any additional logic.
DataSimulatorWarning
Description
A warning class for the data simulator component of the library, used to signal potential issues or unexpected behavior during data simulation.
Inputs
None
Outputs
None
Internal Logic
This class simply inherits from UserWarning and does not define any additional logic.
PreprocessWarning
Description
A warning class for the preprocessing component of the library, used to signal potential issues or unexpected behavior during data preprocessing.
Inputs
None
Outputs
None
Internal Logic
This class simply inherits from UserWarning and does not define any additional logic.
SharedMutationJoiningSolverWarning
Description
A warning class for the SharedMutationJoiningSolver class, used to signal potential issues or unexpected behavior during tree reconstruction using this solver.
Inputs
None
Outputs
None
Internal Logic
This class simply inherits from UserWarning and does not define any additional logic.
ParameterEstimateWarning
Description
A warning class for the parameter estimation component of the library, used to signal potential issues or unexpected behavior during parameter estimation.
Inputs
None
Outputs
None
Internal Logic
This class simply inherits from UserWarning and does not define any additional logic.
PlottingWarning
Description
A warning class for the plotting component of the library, used to signal potential issues or unexpected behavior during plotting.
Inputs
None
Outputs
None
Internal Logic
This class simply inherits from UserWarning and does not define any additional logic.
LeafSubsamplerWarning
Description
A warning class for the LeafSubsampler class, used to signal potential issues or unexpected behavior during leaf subsampling.
Inputs
None
Outputs
None
Internal Logic
This class simply inherits from UserWarning and does not define any additional logic.