Here’s a detailed documentation of the target file test/solver_tests/spectral_test.py
:
This file contains unit tests for the SpectralSolver class and related utility functions in the Cassiopeia package. It tests various aspects of the spectral solver algorithm, including similarity calculations, graph construction, and the overall solving process.
The main class SpectralSolverTest
inherits from unittest.TestCase
and contains multiple test methods. These methods test different components of the SpectralSolver, such as similarity calculations, graph construction, and the complete solving process. The file also includes helper functions like find_triplet_structure
to assist in verifying the correctness of the generated trees.
find_triplet_structure
This function determines the structure of a triplet in a given tree.
Name | Type | Description |
---|---|---|
triplet | tuple | A tuple of three node labels |
T | networkx.DiGraph | The tree to analyze |
Name | Type | Description |
---|---|---|
structure | str | The structure of the triplet (“ab”, “ac”, “bc”, or ”-“) |
SpectralSolverTest
This class contains unit tests for the SpectralSolver and related utilities.
test_similarity
test_similarity_weighted
test_graph_construction
test_graph_construction_weighted
test_hill_climb
test_simple_base_case
test_simple_base_case_string
test_simple_base_case2
test_simple_base_case2_priors
Dependency | Purpose |
---|---|
unittest | Provides the testing framework |
itertools | Used for generating combinations |
networkx | Used for graph operations |
pandas | Used for data manipulation |
cassiopeia | The main package being tested |
The tests use assertions provided by the unittest
framework to check for correctness. No explicit error handling is implemented in this test file.
No explicit logging is implemented in this test file. The unittest
framework handles test result reporting.
find_triplet_structure
function is used to compare the structure of the generated trees with expected structures.This test file is crucial for ensuring the correctness and reliability of the SpectralSolver implementation in the Cassiopeia package.
Here’s a detailed documentation of the target file test/solver_tests/spectral_test.py
:
This file contains unit tests for the SpectralSolver class and related utility functions in the Cassiopeia package. It tests various aspects of the spectral solver algorithm, including similarity calculations, graph construction, and the overall solving process.
The main class SpectralSolverTest
inherits from unittest.TestCase
and contains multiple test methods. These methods test different components of the SpectralSolver, such as similarity calculations, graph construction, and the complete solving process. The file also includes helper functions like find_triplet_structure
to assist in verifying the correctness of the generated trees.
find_triplet_structure
This function determines the structure of a triplet in a given tree.
Name | Type | Description |
---|---|---|
triplet | tuple | A tuple of three node labels |
T | networkx.DiGraph | The tree to analyze |
Name | Type | Description |
---|---|---|
structure | str | The structure of the triplet (“ab”, “ac”, “bc”, or ”-“) |
SpectralSolverTest
This class contains unit tests for the SpectralSolver and related utilities.
test_similarity
test_similarity_weighted
test_graph_construction
test_graph_construction_weighted
test_hill_climb
test_simple_base_case
test_simple_base_case_string
test_simple_base_case2
test_simple_base_case2_priors
Dependency | Purpose |
---|---|
unittest | Provides the testing framework |
itertools | Used for generating combinations |
networkx | Used for graph operations |
pandas | Used for data manipulation |
cassiopeia | The main package being tested |
The tests use assertions provided by the unittest
framework to check for correctness. No explicit error handling is implemented in this test file.
No explicit logging is implemented in this test file. The unittest
framework handles test result reporting.
find_triplet_structure
function is used to compare the structure of the generated trees with expected structures.This test file is crucial for ensuring the correctness and reliability of the SpectralSolver implementation in the Cassiopeia package.