LineageTracingDataSimulator.py

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High-level description

The LineageTracingDataSimulator class in LineageTracingDataSimulator.py is an abstract base class for simulating lineage tracing data on a CassiopeiaTree. It provides a framework for overlaying lineage tracing data onto a tree structure, enabling the exploration of different lineage tracing technologies and their impact on reconstructing cell phylogenies.

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Code Structure

The LineageTracingDataSimulator class inherits from the abstract base class DataSimulator and defines a single abstract method, overlay_data. This method is intended to be implemented by concrete subclasses to perform the actual data overlay based on the specific lineage tracing technology being simulated.

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References

This code references the following symbols:

• cassiopeia.data.CassiopeiaTree
• cassiopeia.simulator.DataSimulator.DataSimulator

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Symbols

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LineageTracingDataSimulator

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Description

This is an abstract class that serves as a base for all lineage tracing data simulators. It defines the common interface for simulating lineage tracing data on a CassiopeiaTree.

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Inputs

This class does not have its own constructor and therefore does not accept any direct inputs.

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Outputs

This class is an abstract class and does not directly produce outputs.

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Internal Logic

This class does not have any internal logic as it is an abstract class.

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Side Effects

This class does not have any side effects as it is an abstract class.

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Performance Considerations

This class does not have any performance considerations as it is an abstract class.

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Dependencies

This code depends on the following external libraries:

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Configuration

This code does not define any configuration options.

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Error Handling

This code does not implement specific error handling beyond basic exception raising.

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Logging

This code does not implement logging.

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API/Interface Reference

This code does not expose an API.